PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G16190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family YABBY
Protein Properties Length: 262aa    MW: 27802.4 Da    PI: 7.7843
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G16190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY208.23e-64252146170
            YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee...................lleel 75 
                        eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+        ++l+  + l      +                   ++e+ 
  LPERR04G16190.1  25 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlpaaaNQLPFGQALLS----PtsphglldevpsfqapqslMTEQA 114
                      579******************************************98873333323333333333....2455699999999987765433333 PP

            YABBY  76 kveeenlksnvekeesastsvssekl......senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                        + ++++s +   +s  ++++++++      s +++ + p+  +  ++r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWa
  LPERR04G16190.1 115 SPNVSSITSSN---SSCANNTPATSMasaankSAQREPQQPKSAQsaTNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWA 205
                      33333333322...22223333333334443344444455555554589********************************************* PP

            YABBY 162 hfPkihfgl 170
                      hfP+ihfgl
  LPERR04G16190.1 206 HFPHIHFGL 214
                      *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-7025214IPR006780YABBY protein
SuperFamilySSF470952.75E-7157207IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-4165206IPR009071High mobility group box domain
CDDcd000847.97E-5168204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMSSAAETFS LDHLAQHQPP PPLAEQEQLC YVHCNFCDTI LAVGVPCSSL FKTVTVRCGH  60
CANLLSVNLR GLLLPAAANQ LPFGQALLSP TSPHGLLDEV PSFQAPQSLM TEQASPNVSS  120
ITSSNSSCAN NTPATSMASA ANKSAQREPQ QPKSAQSATN RTSEKRQRVP SAYNRFIKDE  180
IQRIKASNPD ITHREAFSAA AKNWAHFPHI HFGLMPDQGL KKAGIQSQDG PGECMLFKDG  240
LYAAAAAAAA ATAASSMGVT PF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740170.0AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBankAK0702050.0AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634596.11e-158PREDICTED: protein YABBY 5
SwissprotQ01JG21e-160YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-160YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0D9W7L70.0A0A0D9W7L7_9ORYZ; Uncharacterized protein
STRINGLOC_Os04g45330.11e-157(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-55YABBY family protein